SerialEM Tutorial Topics


1. SerialEM Basics

2. AutoTomography Tutorial

3. Mosaics with SerialEM (Mosaic Tomography)

4. Advanced Topics with SerialEM

Specific Information to the Microscopes

CCDB ID Generator For Developers

FEI Titan_Spirit

J3200EF TEM

FEI Spirit

JEM 4000 #1 User information

JEM 4000 Developers page

JEOL 4000 #2 Specific Info

NoteSerialEM is currently installed on the Titan 300Kev, FEI Spirit 120Kev, JEM 4000#1/JEM 4000#2, and JEOL 3200.  The installations

of SerialEM on the JEM 4000#1/#2 are customized installations.  Please pay attention to the special instructions for running

SerialEM on our JEOL microscopes throughout this tutorial.






Pixel Sizes for Detectors on NCMIR Transmission Electron Microscopes


4000#1

4kx4k NCMIR Lens Coupled CCD Camera (Measured Jan 2010)

Jeol 3200

Tietz 4k x 4k Camera (Measured Jan 10, 2010)

Mag(X)

Pixel Size(nm)

Mag(X)

PixelSize(nm)

3000

4.7

1500

4.22

4000

3.57

2000

3.18

5000

2.86

2500

2.53

6000

2.41

3000

2.12

8000

1.8

4000

1.60

10000

1.43

5000

1.23

12000

1.23

6000

1.03

15000

0.98

8000

0.77

20000

0.75

10K

0.61

25000

0.6

12K

0.51

30000

0.49

15K

0.42

40000

0.37

20K

0.316

50000

0.301

25K

0.25

 

 

30K

0.22

 

 

40K

0.16

4000#2 8k x 8k camera system

Mag

Pixel Size in nm

2500

2.74

3000

2.26

4000

1.70

5000

1.42

8000

0.92

10000

0.74

12000

0.62

15000

0.49

20000

0.33

25000

0.27

30000

0.23

40000

0.18

 

 

120Kev FEI Spirit 2kx2k Tietz camera system

MAG

Pixel Size in NM

400

34.2

500

27.0

600

22.9

1100

11.5

1700

7.74

2100

6.00

2700

4.53

3200

3.97

4400

2.88

6500

1.91

11000

1.13

15000

0.82

21000

0.58

26000

0.49

30000

0.41

42000

0.30

52000

0.24

 

 

 

 

Titan 300Kev 4kx4k Gatan Ultrascan/ 2kx2k GIF Camera



Titan

4K UltraScan

 

Titan

2k GIF Camera

Mag

Pixel Size in nm

 

Mag

Pixel Size in nm

1700

5.16

 

700

19.3

2200

4.12

 

900

15.3

2900

3.15

 

1200

11.9

3800

2.35

 

1600

9.4

5000

1.76

 

2000

7.3

6500

1.36

 

2500

6.18

8700

1.00

 

2300

6.5

11000

0.81

 

3600

4.14

14000

0.64

 

4800

3.31

18000

0.51

 

 

 

22500

0.411

 

 

 

29000

0.329

 

 

 

37000

0.25

 

 

 

47000

0.19

 

 

 

59000

0.15

 

 

 

75000

0.12

 

 

 




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